CLI Reference

tskit2zarr convert

tskit2zarr convert [OPTIONS] TS_PATH ZARR_PATH

Options

--contig-id <contig_id>

Contig/chromosome ID (default: ‘1’)

--isolated-as-missing

Treat isolated nodes as missing

-l, --variants-chunk-size <variants_chunk_size>

Chunk size in the variants dimension

-w, --samples-chunk-size <samples_chunk_size>

Chunk size in the samples dimension

-v, --verbose

Increase verbosity

-P, --progress, -Q, --no-progress

Show progress bars (default: show)

-p, --worker-processes <worker_processes>

Number of worker processes

Default:

0

-f, --force

Force overwriting of existing directories

Arguments

TS_PATH

Required argument

ZARR_PATH

Required argument