Index

Symbols | C | I | P | T | V | Z

Symbols

C

convert() (in module bio2zarr.tskit)
- (in module bio2zarr.vcf)

I

ICF_PATH

IN_PATH
- plink2zarr-convert command line option

P

PARTITION
- vcf2zarr-dencode-partition command line option
- vcf2zarr-dexplode-partition command line option
PATH
- vcf2zarr-inspect command line option
plink2zarr-convert command line option
- --force
- --no-progress
- --progress
- --samples-chunk-size
- --variants-chunk-size
- --verbose
- --worker-processes
- -f
- -l
- -p
- -P
- -Q
- -v
- -w
- IN_PATH
- ZARR_PATH

T

TS_PATH
- tskit2zarr-convert command line option
tskit2zarr-convert command line option
- --contig-id
- --force
- --isolated-as-missing
- --no-progress
- --progress
- --samples-chunk-size
- --variants-chunk-size
- --verbose
- --worker-processes
- -f
- -l
- -P
- -p
- -Q
- -v
- -w
- TS_PATH
- ZARR_PATH

V

vcf2zarr-convert command line option
- --force
- --local-alleles
- --no-local-alleles
- --no-progress
- --progress
- --samples-chunk-size
- --variants-chunk-size
- --verbose
- --worker-processes
- -f
- -l
- -P
- -p
- -Q
- -v
- -w
- VCFS
- ZARR_PATH
vcf2zarr-dencode-finalise command line option
- --no-progress
- --progress
- --verbose
- -P
- -Q
- -v
- ZARR_PATH
vcf2zarr-dencode-init command line option
- --force
- --json
- --max-variant-chunks
- --no-progress
- --num-partitions
- --progress
- --samples-chunk-size
- --schema
- --variants-chunk-size
- --verbose
- -f
- -l
- -n
- -P
- -Q
- -s
- -V
- -v
- -w
- ICF_PATH
- ZARR_PATH
vcf2zarr-dencode-partition command line option
- --one-based
- --verbose
- -v
- PARTITION
- ZARR_PATH
vcf2zarr-dexplode-finalise command line option
- --verbose
- -v
- ICF_PATH
vcf2zarr-dexplode-init command line option
- --column-chunk-size
- --compressor
- --force
- --json
- --no-progress
- --num-partitions
- --progress
- --verbose
- --worker-processes
- -c
- -C
- -f
- -n
- -P
- -p
- -Q
- -v
- ICF_PATH
- VCFS

vcf2zarr-dexplode-partition command line option
- --one-based
- --verbose
- -v
- ICF_PATH
- PARTITION
vcf2zarr-encode command line option
- --force
- --max-memory
- --max-variant-chunks
- --no-progress
- --progress
- --samples-chunk-size
- --schema
- --variants-chunk-size
- --verbose
- --worker-processes
- -f
- -l
- -M
- -P
- -p
- -Q
- -s
- -v
- -V
- -w
- ICF_PATH
- ZARR_PATH
vcf2zarr-explode command line option
- --column-chunk-size
- --compressor
- --force
- --no-progress
- --progress
- --verbose
- --worker-processes
- -c
- -C
- -f
- -P
- -p
- -Q
- -v
- ICF_PATH
- VCFS
vcf2zarr-inspect command line option
- --verbose
- -v
- PATH
vcf2zarr-mkschema command line option
vcfpartition command line option
- --num-partitions
- --partition-size
- --verbose
- --version
- -n
- -s
- -v
- VCFS
VCFS

Z

ZARR_PATH