sgkit
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API reference
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Methods
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Variables
sgkit.variables.base_prediction_spec
sgkit.variables.call_allele_count_spec
sgkit.variables.call_dosage_spec
sgkit.variables.call_dosage_mask_spec
sgkit.variables.call_genotype_spec
sgkit.variables.call_genotype_mask_spec
sgkit.variables.call_genotype_phased_spec
sgkit.variables.call_genotype_probability_spec
sgkit.variables.call_genotype_probability_mask_spec
sgkit.variables.covariates_spec
sgkit.variables.dosage_spec
sgkit.variables.genotype_counts_spec
sgkit.variables.loco_prediction_spec
sgkit.variables.meta_prediction_spec
sgkit.variables.pc_relate_phi_spec
sgkit.variables.sample_id_spec
sgkit.variables.sample_pcs_spec
sgkit.variables.stat_Garud_h1_spec
sgkit.variables.stat_Garud_h12_spec
sgkit.variables.stat_Garud_h123_spec
sgkit.variables.stat_Garud_h2_h1_spec
sgkit.variables.traits_spec
sgkit.variables.variant_allele_spec
sgkit.variables.variant_allele_count_spec
sgkit.variables.variant_allele_frequency_spec
sgkit.variables.variant_allele_total_spec
sgkit.variables.variant_beta_spec
sgkit.variables.variant_call_rate_spec
sgkit.variables.variant_contig_spec
sgkit.variables.variant_hwe_p_value_spec
sgkit.variables.variant_id_spec
sgkit.variables.variant_n_called_spec
sgkit.variables.variant_n_het_spec
sgkit.variables.variant_n_hom_alt_spec
sgkit.variables.variant_n_hom_ref_spec
sgkit.variables.variant_n_non_ref_spec
sgkit.variables.variant_p_value_spec
sgkit.variables.variant_position_spec
sgkit.variables.variant_t_value_spec
sgkit.variables.window_start_spec
sgkit.variables.window_stop_spec
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sgkit.variables.variant_position_spec
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sgkit.variables.variant_position_spec
¶
sgkit.variables.
variant_position_spec
= ArrayLikeSpec(default_name='variant_position', kind='i', ndim=1)
¶
The reference position of the variant.