sgkit.variables.loco_prediction_spec¶

sgkit.variables.loco_prediction_spec = ArrayLikeSpec(default_name='loco_prediction', kind='f', ndim=3)¶: REGENIE’s loco_prediction (contigs, samples, outcomes). LOCO predictions resulting from Stage 2 predictions ignoring effects for variant blocks on held out contigs. This will be absent if the data provided does not contain at least 2 contigs.