sgkit.display_genotypes#
- sgkit.display_genotypes(ds, max_variants=60, max_samples=10)#
Display genotype calls.
Display genotype calls in a tabular format, with rows for variants, and columns for samples. Genotypes are displayed in the same manner as in VCF. For example, 1/0 is a diploid call of the first alternate allele and the reference allele (0). Phased calls are denoted by a | separator. Missing values are denoted by ..
- Parameters:
- ds
Dataset The dataset containing genotype calls in the call/genotype variable, and (optionally) phasing information in the call/genotype_phased variable. If no phasing information is present genotypes are assumed to be unphased.
- max_variants
int(default:60) The maximum number of variants (rows) to display. If there are more variants than this then the table is truncated.
- max_samples
int(default:10) The maximum number of samples (columns) to display. If there are more samples than this then the table is truncated.
- ds
- Return type:
GenotypeDisplay- Returns:
: A printable object to display genotype information.