sgkit.variables.regenie_loco_prediction_spec

sgkit.variables.regenie_loco_prediction_spec = ArrayLikeSpec(default_name='regenie_loco_prediction', __doc__="\nREGENIE's regenie_loco_prediction (contigs, samples, outcomes). LOCO predictions\nresulting from Stage 2 predictions ignoring effects for variant blocks on\nheld out contigs. This will be absent if the data provided does not contain\nat least 2 contigs.\n", kind='f', ndim=3, dims=('contigs', 'samples', 'outcomes'))

REGENIE’s regenie_loco_prediction (contigs, samples, outcomes). LOCO predictions resulting from Stage 2 predictions ignoring effects for variant blocks on held out contigs. This will be absent if the data provided does not contain at least 2 contigs.