sgkit.variables.call_genotype_index_spec

sgkit.variables.call_genotype_index_spec = ArrayLikeSpec(default_name='call_genotype_index', __doc__='\nSingle integer values encoding each call genotype. Each unique integer corresponds\nto a unique call genotype following the VCF specification for arrays of size "G".\nFor biallelic genotypes, this is the count of the alternate allele. Values of -1\nindicate call genotypes with missing alleles.\n', kind='i', ndim=2, dims=('variants', 'samples'))

Single integer values encoding each call genotype. Each unique integer corresponds to a unique call genotype following the VCF specification for arrays of size “G”. For biallelic genotypes, this is the count of the alternate allele. Values of -1 indicate call genotypes with missing alleles.